![]() If you wish to install the develop branch of monocle3, execute: devtools :: install_github ( 'cole-trapnell-lab/monocle3', ref = "develop" ) Testing the installation Now, install monocle3 through the cole-trapnell-lab GitHub, execute: install.packages ( "devtools" ) devtools :: install_github ( 'cole-trapnell-lab/leidenbase' ) devtools :: install_github ( 'cole-trapnell-lab/monocle3' ) ![]() ![]() Next, install a few Bioconductor dependencies that aren't automatically installed: BiocManager :: install ( c ( 'BiocGenerics', 'DelayedArray', 'DelayedMatrixStats', 'limma', 'S4Vectors', 'SingleCellExperiment', 'SummarizedExperiment', 'batchelor', 'Matrix.utils' )) To install Bioconductor, open R and run: if ( ! requireNamespace ( "BiocManager", quietly = TRUE )) install.packages ( "BiocManager" ) BiocManager :: install ( version = "3.10" ) Monocle3 0.2.3 or higher to have access to the latest features.
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